FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane3_Index15_1.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 23907063 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 49 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCAGG | 4970970 | 2.5693545 | 5.0800214 | 1 |
| CCTGG | 4989810 | 2.5672643 | 6.0680685 | 1 |
| GAAGA | 5138225 | 2.5587316 | 5.1459975 | 2 |
| CTTCT | 5223260 | 2.545068 | 5.2931504 | 1 |
| AAGAA | 5164620 | 2.514386 | 5.016733 | 2 |
| CTGGA | 4831865 | 2.4401457 | 8.314567 | 1 |
| TCCAG | 4685310 | 2.3567135 | 5.2835255 | 2 |
| CTCCT | 4636645 | 2.3122964 | 6.6866136 | 1 |
| CTGGG | 4388665 | 2.2670002 | 7.974609 | 1 |
| CAGGA | 4381985 | 2.223147 | 5.3803253 | 1 |
| CTTCA | 4514515 | 2.209862 | 5.400446 | 1 |
| CCCAG | 4238905 | 2.1822479 | 6.8523016 | 1 |
| CTCCA | 4355190 | 2.1819415 | 7.1859617 | 1 |
| CTCTG | 4081900 | 2.043782 | 6.0249815 | 1 |
| CTGGC | 3664525 | 1.8854033 | 5.0460806 | 1 |
| TGGAA | 3748810 | 1.85827 | 5.1185617 | 2 |
| CTGAA | 3761445 | 1.8571098 | 5.2276344 | 1 |
| CTCAG | 3484160 | 1.7525344 | 5.7496796 | 1 |
| CTTGG | 3256990 | 1.637273 | 5.1302547 | 1 |